Applying Graph Theory to Context-Dependent Connectivity
With the emergence of high-powered computing resources there has been substantial work in developing methods to understand the networks of the resting brain. However, work to understand the same...
View ArticleDynamics of the Resting State
With the emergence large fMRI datasets and advanced analysis methods, now is the time to explore the dynamics of connectivity. While there have been several proposals about how to this recently, they...
View ArticleThe Global Alzheimer’s Association Interactive Network (GAAIN)
A Global Cooperative of Sharing, Investigation, & Discovery The Global Alzheimer’s Association Interactive Network (GAAIN) is a collaborative project that will provide researchers around the globe...
View ArticleData-sharing as Competitive Display
The biggest problem facing functional imaging science today is the culture of functional imaging science. Data-hoarding continues to be a source of cultural capital. Younger researchers fear that by...
View ArticleR-fMRI Based Tissue Classification
Developing functional imaging based markers of tissue type (GM, WM, CSF) has potential applications for assessing human brain function and/or image quality. This project aims to develop an R-fMRI based...
View ArticleDecoding Mental States from Human Brain Activity
Summary This project is rather content-related than highly methodical. However, it offers a problem that can be fully solved during Brainhack 2012, if it is solveable at all. And it can open up a...
View ArticleC-PAC (Configurable Pipeline for the Analysis of Connectomes)
SUMMARY: Pipeline implementation, execution and comparison for functional connectomics remains a key challenge for novice and expert investigators alike. In order to address this challenge, the INDI...
View ArticleCerebellum maps
Investigating the cerebellar anatomy and functional connectivity requires high-resolution information. We aim to develop a pipeline to generate cerebellar surface maps by using a high-resolution 7T...
View ArticleMusic Dynamics
Several fMRI studies reported activations in primary auditory and subcortical brain regions when comparing the processing of pleasant and unpleasant music excerpts. However, the potential temporal...
View ArticleThe 24-Hour Project
The goal of this project was to complete a task-based fMRI experiment from conception to manuscript in a 24 hour period. While we did not meet this goal (primarily limited by administrative issues that...
View ArticleIntegrating NIDM and Research Objects (RO)
Summary: NIDM is a data sharing model that’s being built to capture details of brain imaging data, analysis and results. ResearchObjects are containers to capture publications, data, workflows. The...
View ArticleRe-architecting Nipype
Summary: A brainstorming + proof of concept implementations for the next evolution of Nipype (support for py3k, simpler semantic model, CI testing with testkraut, integration with biopython, automated...
View ArticleInteractive IPython notebooks for brain imaging analysis
Summary: This project will build on a starting set of IPython notebooks to replace BIPS as a environment for scalable, reproducible analysis and interactive exploration of data. The project will also...
View ArticleNeuroSynth Bibliometrics
Summary: Bibliometrics, which explores citation practices in the scientific literature, offers an empirical entry point for understanding research communities. By incorporating information about...
View ArticleLORIS
Summary: Longitudinal Online Research and Imaging System (LORIS ; Das et al., 2011) is a modular and extensible web-based data management system that integrates all aspects of a multi-center study:...
View ArticleBrainSpell Tagging Sprint
Summary: More than 1 neuroimaging paper is published every hour. But we can keep up with the literature if we do it all together! BrainSpell is a web portal where we can annotate the papers extracted...
View Articleneurostars.org
Summary: As part of INCF’s Google Summer of Code, neurostars.org, a question and answer site will incorporate new features: https://github.com/brainstorm/biostar-central/issues?state=open A semantic...
View ArticleSpinalCordHack 2014
Summary: To follow close on the ISMRM meeting in Milan, we are inviting participants to the first spinal cord hacking event. This half day event will take place near the conference venue on Friday May...
View ArticleData sharing: Making it work
Summary: Brain imaging lags behind other disciplines in data sharing. But to make data sharing in neuroimaging commonplace we need the coordination of many different players. The purpose of this...
View ArticleNipype for XNAT
Summary: Nipype has the potential to be a great feature in XNAT. For this project, we will add UI and infrastructure in XNAT to manage and run nipype pipelines. We will also add new capabilities in...
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